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Sequence and assembly

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Contigs

Track showing underlying assembly contigs.
Sequence

Track showing sequence in both directions. Only displayed at 1Kb and below.

Markers

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Primary assembly mapping

Mappings between primary assembly and alternate loci or patches.

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Genes and transcripts

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Coding transcripts only (in coding genes)

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Comprehensive Gene Annotations from GENCODE M25 (Genes (Comprehensive set from GENCODE M25))

The GENCODE Comprehensive set is the gene set for human and mouse
CCDS set

Protein coding sequences agreed upon by the Consensus Coding Sequence project, or CCDS.

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Coding transcripts only (in coding genes)

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Prediction transcripts

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mRNA and protein alignments

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EST cluster (Unigene)

Positions of UniGene sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences.
Human cDNAs (RefSeq/ENA)

The latest set of cDNAs for this species from the European Nucleotide Archive and NCBI RefSeq were aligned to the current genome using Exonerate.
Mouse cDNAs (RefSeq/ENA)

Mouse cDNAs from NCBI RefSeq and ENA are aligned to the genome using Exonerate.

EST alignments

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Variation

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Sequence variants (dbSNP and all other sources)

Sequence variants from all sources

Failed variants

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Compact

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Smaller structural variants (all sources) (SV - Smaller variants)

Structural variants from all sources which are less than 1Mb in length. The colours correspond to the structural variant classes.
For an explanation of the display, see the dbVar documentation.

Regulation

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Regulatory Build

Features from Ensembl Regulatory Build.

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Comparative genomics

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Constrained elements for 111 eutherian mammals EPO-Extended (111 way GERP elements)

GERP conservation scores based on the 111 eutherian mammals EPO-Extended

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Genome targeting

Oligo probes

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Repeat regions

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Information and decorations

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%GC

Shows percentage of Gs & Cs in region
Chromosome bands

Cytogenetic bands
Assembly exceptions

GRC assembly patches, haplotype (HAPs) and pseudo autosomal regions (PARs)
Scale bar ()

Shows the scalebar
Ruler ()

Shows the length of the region being displayed
Alignment Difference Legend
Gene Legend
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Segmentation Legend
Methylation Legend
Motif Feature Legend
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Show counts of number of tracks turned off by the user
Information ()

Details of the region shown in the image

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