Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: per1a ENSDARG00000056885

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Description

period circadian clock 1a [Source:ZFIN;Acc:ZDB-GENE-011220-1]

Gene Synonyms

per1, si:ch211-237l4.4

Location

Chromosome 10: 22,809,715-22,831,611 reverse strand.

GRCz11:CM002894.2

About this gene

This gene has 3 transcripts (splice variants), 182 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
per1a-203	ENSDART00000160115.3	7377	1387aa	ENSDARP00000131343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICG0	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
per1a-202	ENSDART00000100468.4	4209	1352aa	ENSDARP00000091241.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJN2	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
per1a-201	ENSDART00000079459.5	3690	1229aa	ENSDARP00000073915.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZZ4	-

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Summary

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Gene-based displays