Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTX1 ENSGALG00000028817

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Description

orthodenticle homeobox 1 [Source:NCBI gene;Acc:100858585]

Location

Chromosome 3: 9,984,822-9,987,580 forward strand.

GRCg6a:CM000095.5

About this gene

This gene has 2 transcripts (splice variants), 277 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
OTX1-201	ENSGALT00000098690.1	1856	335aa	ENSGALP00000072646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GG58	<p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
OTX1-202	ENSGALT00000042631.3	1335	335aa	ENSGALP00000041020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GG58	<p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,

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Summary

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Gene-based displays