Description
mucin 16, cell surface associated [Source:HGNC Symbol;Acc:HGNC:15582]
Gene Synonyms
CA125, FLJ14303
Location
Chromosome 19: 8,848,844-8,981,342 reverse strand.
GRCh38:CM000681.2
About this gene
This gene has 5 transcripts (splice variants), 124 orthologues and is associated with 140 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| MUC16-201 | ENST00000397910.8 | 43816 | 14507aa | ENSP00000381008.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54212 | Q8WXI7 | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| MUC16-204 | ENST00000599436.1 | 4079 | 1330aa | ENSP00000472781.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | M0R2S7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| MUC16-205 | ENST00000601404.5 | 4078 | 1224aa | ENSP00000470885.1 | Nonsense mediated decay | - | M0QZZ9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| MUC16-202 | ENST00000596768.5 | 2888 | 670aa | ENSP00000472883.1 | Nonsense mediated decay | - | M0R2Y5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| MUC16-203 | ENST00000596956.1 | 352 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
