Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDHB16 ENSG00000272674

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Description

protocadherin beta 16 [Source:HGNC Symbol;Acc:HGNC:14546]

Gene Synonyms

KIAA1621, ME1, PCDH-BETA16, PCDH3X, PCDHB8a

Location

Chromosome 5: 141,181,399-141,186,399 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 2 transcripts (splice variants), 39 orthologues and 61 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
PCDHB16-201	ENST00000609684.2	5001	776aa	ENSP00000477314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4251	Q9NRJ7	-	<p>TSL NA: A transcript that was not analysed for TSL.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:NA, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
PCDHB16-202	ENST00000625044.1	894	222aa	ENSP00000485449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A0A096LP81	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2,

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Summary

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Gene-based displays