Description
retinoid X receptor alpha [Source:MGI Symbol;Acc:MGI:98214]
Gene Synonyms
9530071D11Rik, RXR alpha 1, RXRalpha1
Location
Chromosome 2: 27,676,440-27,762,957 forward strand.
GRCm38:CM000995.2
About this gene
This gene has 8 transcripts (splice variants), 346 orthologues, 11 paralogues and is associated with 82 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Rxra-201 | ENSMUST00000077257.11 | 4905 | 467aa | ENSMUSP00000076491.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS15830 | A2AJP1 P28700 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P3, |
| Rxra-206 | ENSMUST00000166775.7 | 3216 | 467aa | ENSMUSP00000133044.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS15830 | A2AJP1 P28700 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P3, |
| Rxra-203 | ENSMUST00000113934.1 | 1989 | 439aa | ENSMUSP00000109567.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS71011 | Q6LC96 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT1, |
| Rxra-202 | ENSMUST00000100251.8 | 1952 | 439aa | ENSMUSP00000097822.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS71011 | Q6LC96 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT1, |
| Rxra-208 | ENSMUST00000238913.1 | 1631 | 497aa | ENSMUSP00000159198.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A5F8MQ23 | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Rxra-207 | ENSMUST00000238859.1 | 1609 | 322aa | ENSMUSP00000158864.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A5F8MP91 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| Rxra-204 | ENSMUST00000129514.7 | 628 | 165aa | ENSMUSP00000115165.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2AJP2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Rxra-205 | ENSMUST00000148756.1 | 673 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
