Description
CDK5 regulatory subunit associated protein 3 [Source:MGI Symbol;Acc:MGI:1933126]
Gene Synonyms
1810007E24Rik, C53, HSF-27, IC53, MST016, OK/SW-cl.114
Location
Chromosome 11: 96,907,426-96,916,496 reverse strand.
GRCm38:CM001004.2
About this gene
This gene has 11 transcripts (splice variants), 295 orthologues and is associated with 22 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Cdk5rap3-201 | ENSMUST00000103152.10 | 2250 | 503aa | ENSMUSP00000099441.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS25306 | Q99LM2 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Cdk5rap3-202 | ENSMUST00000127048.7 | 768 | 145aa | ENSMUSP00000114849.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | B0QZI8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Cdk5rap3-206 | ENSMUST00000144731.7 | 758 | 124aa | ENSMUSP00000114724.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2A6E1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Cdk5rap3-211 | ENSMUST00000156315.7 | 566 | 140aa | ENSMUSP00000123113.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2A6D9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Cdk5rap3-204 | ENSMUST00000130774.1 | 488 | 80aa | ENSMUSP00000114661.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2A6E0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Cdk5rap3-205 | ENSMUST00000134732.7 | 2201 | 112aa | ENSMUSP00000120258.1 | Nonsense mediated decay | - | D6RJ46 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Cdk5rap3-209 | ENSMUST00000153305.7 | 620 | 142aa | ENSMUSP00000116405.1 | Nonsense mediated decay | - | F2Z486 | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Cdk5rap3-207 | ENSMUST00000147573.7 | 617 | 45aa | ENSMUSP00000118320.1 | Nonsense mediated decay | - | D6RII4 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Cdk5rap3-208 | ENSMUST00000149033.1 | 1207 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Cdk5rap3-210 | ENSMUST00000154289.1 | 836 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Cdk5rap3-203 | ENSMUST00000130767.1 | 820 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
