Gene: Sub1 ENSMUSG00000022205

Description

SUB1 homolog, transcriptional regulator [Source:MGI Symbol;Acc:MGI:104811]

Gene Synonyms

P15, Pc4, Rpo2tc1

Location

Chromosome 15: 11,981,339-11,996,983 reverse strand.

GRCm38:CM001008.2

About this gene

This gene has 4 transcripts (splice variants), 347 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
Sub1-201	ENSMUST00000022816.14	3372	127aa	ENSMUSP00000022816.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27387	P11031	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Sub1-202	ENSMUST00000110504.1	675	127aa	ENSMUSP00000106130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27387	P11031	<p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Sub1-204	ENSMUST00000134414.1	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	<p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3,
Sub1-203	ENSMUST00000129533.7	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	<p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2,

Gene: Sub1 ENSMUSG00000022205

Summary

Gene-based displays

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Gene: Sub1 ENSMUSG00000022205

Summary

Gene-based displays

About Us

Get help

Our sister sites

Follow us