Gene: Slc5a7 ENSMUSG00000023945

Description

solute carrier family 5 (choline transporter), member 7 [Source:MGI Symbol;Acc:MGI:1927126]

Gene Synonyms

CHT1

Location

GRCm38:CM001010.2

About this gene

This gene has 3 transcripts (splice variants), 399 orthologues, 13 paralogues and is associated with 25 phenotypes.

Transcripts

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
Slc5a7-201	ENSMUST00000095712.4	5180	580aa	ENSMUSP00000093379.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28885	Q8BGY9	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Slc5a7-203	ENSMUST00000233758.1	309	34aa	ENSMUSP00000156430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A0A3B2WAN5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
Slc5a7-202	ENSMUST00000233507.1	4084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary