Summary
- Splice variants
- Transcript comparison
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Gene: Cstf1 ENSMUSG00000027498

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Description

cleavage stimulation factor, 3' pre-RNA, subunit 1 [Source:MGI Symbol;Acc:MGI:1914587]

Gene Synonyms

1700057K18Rik

Location

Chromosome 2: 172,370,681-172,382,448 forward strand.

GRCm38:CM000995.2

About this gene

This gene has 2 transcripts (splice variants), 296 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
Cstf1-201	ENSMUST00000116375.1	3451	431aa	ENSMUSP00000112076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17130	Q99LC2	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Cstf1-202	ENSMUST00000151511.7	674	155aa	ENSMUSP00000121178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A2APA3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2,

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Summary

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Gene-based displays