Description
exonuclease 5 [Source:MGI Symbol;Acc:MGI:1920422]
Gene Synonyms
3110037I16Rik, Dem1
Location
Chromosome 4: 120,921,196-120,925,017 reverse strand.
GRCm38:CM000997.2
About this gene
This gene has 4 transcripts (splice variants), 150 orthologues and is associated with 2 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Exo5-201 | ENSMUST00000030375.8 | 1996 | 373aa | ENSMUSP00000030375.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS18596 | Q9CXP9 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Exo5-204 | ENSMUST00000177880.1 | 1969 | 373aa | ENSMUSP00000136408.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS18596 | Q9CXP9 | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Exo5-203 | ENSMUST00000156836.1 | 914 | 132aa | ENSMUSP00000118041.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A0A0MQI0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Exo5-202 | ENSMUST00000144114.1 | 703 | 159aa | ENSMUSP00000116454.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Z4YLZ9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
