Description
non-catalytic region of tyrosine kinase adaptor protein 1 [Source:MGI Symbol;Acc:MGI:109601]
Gene Synonyms
6330586M15Rik, D230010O13Rik, Nck
Location
Chromosome 9: 100,492,293-100,546,134 reverse strand.
GRCm38:CM001002.2
About this gene
This gene has 4 transcripts (splice variants), 243 orthologues, 8 paralogues and is associated with 11 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Nck1-202 | ENSMUST00000116522.7 | 4476 | 377aa | ENSMUSP00000112221.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS23440 | Q99M51 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Nck1-201 | ENSMUST00000112874.3 | 1513 | 313aa | ENSMUSP00000108495.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS85715 | Q8BH99 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Nck1-203 | ENSMUST00000186591.6 | 734 | 206aa | ENSMUSP00000140971.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A087WSB1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Nck1-204 | ENSMUST00000188670.1 | 600 | 132aa | ENSMUSP00000140143.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A087WQD1 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
