Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Gene: Emx1 ENSMUSG00000033726

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Description

empty spiracles homeobox 1 [Source:MGI Symbol;Acc:MGI:95387]

Location

Chromosome 6: 85,187,438-85,204,462 forward strand.

GRCm38:CM000999.2

About this gene

This gene has 2 transcripts (splice variants), 255 orthologues, 3 paralogues and is associated with 23 phenotypes.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
Emx1-201	ENSMUST00000045942.8	1561	257aa	ENSMUSP00000046026.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20290	Q04742	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Emx1-202	ENSMUST00000173919.1	1258	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1,

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Summary

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Gene-based displays