Description
Fanconi anemia, complementation group I [Source:MGI Symbol;Acc:MGI:2384790]
Location
Chromosome 7: 79,391,929-79,450,264 forward strand.
GRCm38:CM001000.2
About this gene
This gene has 7 transcripts (splice variants), 283 orthologues and is associated with 2 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Fanci-201 | ENSMUST00000036865.12 | 4645 | 1330aa | ENSMUSP00000044931.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS39991 | Q8K368 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Fanci-205 | ENSMUST00000137667.2 | 2864 | 850aa | ENSMUSP00000117992.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | F7ALG5 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Fanci-202 | ENSMUST00000118959.7 | 1301 | 300aa | ENSMUSP00000114122.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | F2Z414 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Fanci-203 | ENSMUST00000126456.7 | 575 | 73aa | ENSMUSP00000114513.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | D3YVC7 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Fanci-204 | ENSMUST00000132091.7 | 4492 | 394aa | ENSMUSP00000122113.1 | Nonsense mediated decay | - | Q8K368 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Fanci-206 | ENSMUST00000205817.1 | 625 | 78aa | ENSMUSP00000146293.1 | Nonsense mediated decay | - | A0A0U1RQ89 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Fanci-207 | ENSMUST00000206121.1 | 556 | 111aa | ENSMUSP00000146237.1 | Nonsense mediated decay | - | A0A0U1RQ41 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
