Gene: Upf2 ENSMUSG00000043241

Description

UPF2 regulator of nonsense transcripts homolog (yeast) [Source:MGI Symbol;Acc:MGI:2449307]

Location

Chromosome 2: 5,951,469-6,056,703 forward strand.

GRCm38:CM000995.2

About this gene

This gene has 3 transcripts (splice variants), 310 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
Upf2-201	ENSMUST00000060092.12	5174	1269aa	ENSMUSP00000058375.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38041	A2AT37	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1,
Upf2-202	ENSMUST00000128200.1	2826	523aa	ENSMUSP00000119348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	F6Q3G7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1,
Upf2-203	ENSMUST00000144901.1	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	<p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2,

Gene: Upf2 ENSMUSG00000043241

Summary

Gene-based displays

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Gene: Upf2 ENSMUSG00000043241

Summary

Gene-based displays

About Us

Get help

Our sister sites

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