Description
jumonji domain containing 6 [Source:MGI Symbol;Acc:MGI:1858910]
Gene Synonyms
5730436I23Rik, PSR, PtdSerR, Ptdsr
Location
Chromosome 11: 116,837,432-116,843,449 reverse strand.
GRCm38:CM001004.2
About this gene
This gene has 7 transcripts (splice variants), 296 orthologues, 2 paralogues and is associated with 28 phenotypes.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Jmjd6-201 | ENSMUST00000047616.9 | 1668 | 403aa | ENSMUSP00000047570.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS25678 | Q9ERI5 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Jmjd6-202 | ENSMUST00000124831.1 | 838 | 213aa | ENSMUSP00000122867.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | F7BDP4 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Jmjd6-207 | ENSMUST00000142495.7 | 1437 | 270aa | ENSMUSP00000117922.1 | Nonsense mediated decay | - | G3UVU9 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Jmjd6-204 | ENSMUST00000140349.7 | 1201 | 287aa | ENSMUSP00000120850.1 | Nonsense mediated decay | - | F6VRF7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Jmjd6-205 | ENSMUST00000140513.1 | 1196 | 309aa | ENSMUSP00000115086.1 | Nonsense mediated decay | - | F6VMC4 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Jmjd6-203 | ENSMUST00000130120.1 | 4538 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Jmjd6-206 | ENSMUST00000141735.7 | 2072 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
