Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
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Genetic Variation
- Variant table
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- Structural variants
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ID History
- Gene history

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Gene: NTRK1 ENSPTRG00000001478

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Description

neurotrophic receptor tyrosine kinase 1 [Source:VGNC Symbol;Acc:VGNC:9393]

Location

Chromosome 1: 134,943,363-135,009,222 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 283 orthologues and 58 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
NTRK1-203	ENSPTRT00000043472.6	2713	790aa	ENSPTRP00000040371.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X0Z8 H2R096	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
NTRK1-204	ENSPTRT00000081259.1	2391	796aa	ENSPTRP00000083380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T3D1 A0A6D2X3C3	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
NTRK1-201	ENSPTRT00000083721.1	2283	760aa	ENSPTRP00000078223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SMR7 A0A6D2WRL1	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
NTRK1-202	ENSPTRT00000104421.1	1146	381aa	ENSPTRP00000093172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TVZ4	-

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Summary

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Gene-based displays