Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: JMJD1C ENSPTRG00000002540

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Description

jumonji domain containing 1C [Source:VGNC Symbol;Acc:VGNC:4718]

Location

Chromosome 10: 64,043,463-64,341,760 reverse strand.

Pan_tro_3.0:CM000324.3

About this gene

This gene has 4 transcripts (splice variants), 317 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
JMJD1C-201	ENSPTRT00000004753.5	9032	2358aa	ENSPTRP00000004380.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XQG5 H2Q1Y6	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
JMJD1C-204	ENSPTRT00000095483.1	7623	2540aa	ENSPTRP00000093462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TWV3 A0A6D2XCK2	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
JMJD1C-202	ENSPTRT00000095659.1	7332	2443aa	ENSPTRP00000074126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAX0	-
JMJD1C-203	ENSPTRT00000101539.1	7332	2317aa	ENSPTRP00000066873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRC0	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,

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Summary

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Gene-based displays