Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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- Ensembl protein families
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Genetic Variation
- Variant table
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- Structural variants
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Gene: PDE9A ENSPTRG00000013946

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Description

phosphodiesterase 9A [Source:VGNC Symbol;Acc:VGNC:1134]

Location

Chromosome 21: 29,193,703-29,315,803 forward strand.

Pan_tro_3.0:CM004190.1

About this gene

This gene has 3 transcripts (splice variants), 272 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
PDE9A-201	ENSPTRT00000026016.4	1812	603aa	ENSPTRP00000024002.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2K6HIZ1	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
PDE9A-202	ENSPTRT00000107624.1	1632	543aa	ENSPTRP00000092026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TSS8	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
PDE9A-203	ENSPTRT00000076670.1	1584	527aa	ENSPTRP00000067625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSE2	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,

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Summary

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Gene-based displays