Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
Ontologies
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Genetic Variation
- Variant table
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- Structural variants
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ID History
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Gene: SBF1 ENSPTRG00000014541

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Description

SET binding factor 1 [Source:VGNC Symbol;Acc:VGNC:6016]

Location

Chromosome 22: 37,459,958-37,487,625 reverse strand.

Pan_tro_3.0:CM000335.3

About this gene

This gene has 3 transcripts (splice variants), 302 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
SBF1-201	ENSPTRT00000082100.1	5706	1901aa	ENSPTRP00000066309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RNN4	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
SBF1-202	ENSPTRT00000099238.1	5682	1893aa	ENSPTRP00000069567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7BG63	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
SBF1-203	ENSPTRT00000043297.5	5607	1868aa	ENSPTRP00000044530.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R2W0	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,

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Summary

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Gene-based displays