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- Splice variants
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- Gene alleles
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Gene: NPAS3 ENSSSCG00000001964

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Description

neuronal PAS domain protein 3 [Source:VGNC Symbol;Acc:VGNC:90838]

Location

Chromosome 7: 65,928,075-66,801,611 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 4 transcripts (splice variants), 296 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
NPAS3-201	ENSSSCT00000083614.1	3741	944aa	ENSSSCP00000060823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q968	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
NPAS3-202	ENSSSCT00000062817.2	2820	939aa	ENSSSCP00000059543.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BSW5	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
NPAS3-203	ENSSSCT00000002197.4	2781	926aa	ENSSSCP00000002146.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SHH0	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
NPAS3-204	ENSSSCT00000075964.1	594	156aa	ENSSSCP00000072469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T7U5 A0A5G2RDJ6	-

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Summary

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Gene-based displays