Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: CDH13 ENSSSCG00000002684

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Description

cadherin 13 [Source:VGNC Symbol;Acc:VGNC:86477]

Location

Chromosome 6: 4,808,255-5,832,188 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 7 transcripts (splice variants), 293 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
CDH13-202	ENSSSCT00000045679.2	3510	722aa	ENSSSCP00000044818.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ALP4 A0A4X1T346	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
CDH13-201	ENSSSCT00000002977.4	3483	713aa	ENSSSCP00000002898.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T328 A8D737	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
CDH13-203	ENSSSCT00000075565.1	3366	674aa	ENSSSCP00000061692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T2W2 A0A5G2QB64	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
CDH13-206	ENSSSCT00000084036.1	2852	726aa	ENSSSCP00000060682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QF74	-
CDH13-204	ENSSSCT00000079769.1	2359	771aa	ENSSSCP00000060063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q9R1	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
CDH13-207	ENSSSCT00000088987.1	1993	649aa	ENSSSCP00000061878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QBL3	-
CDH13-205	ENSSSCT00000080811.1	567	188aa	ENSSSCP00000060262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T0F1 A0A5G2QPP8	-

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Summary

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Gene-based displays