Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
- Paralogues
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Ontologies
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Gene: ITCH ENSSSCG00000007280

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Description

itchy E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:13890]

Location

Chromosome 17: 37,810,183-37,918,208 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 3 transcripts (splice variants), 400 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ITCH-201	ENSSSCT00000041641.2	5369	873aa	ENSSSCP00000042861.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AG32	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
ITCH-203	ENSSSCT00000007965.4	5360	752aa	ENSSSCP00000032254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZL14	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
ITCH-202	ENSSSCT00000036444.3	5273	841aa	ENSSSCP00000039980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A7X1	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,

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Summary

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Gene-based displays