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- Splice variants
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Gene: CARF ENSSSCG00000016117

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Description

calcium responsive transcription factor [Source:VGNC Symbol;Acc:VGNC:95615]

Location

Chromosome 15: 106,410,491-106,488,027 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 4 transcripts (splice variants) and 222 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
CARF-203	ENSSSCT00000017548.4	5178	690aa	ENSSSCP00000017076.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SHE7	-
CARF-202	ENSSSCT00000038096.2	3925	725aa	ENSSSCP00000042414.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AEL0 A0A4X1V819	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
CARF-204	ENSSSCT00000049286.2	3459	649aa	ENSSSCP00000036394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZY06 A0A4X1V827	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
CARF-201	ENSSSCT00000050182.2	2255	664aa	ENSSSCP00000053940.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BBM9	-

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Summary

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Gene-based displays