Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Gene: GRIA1 ENSSSCG00000022569

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Description

glutamate ionotropic receptor AMPA type subunit 1 [Source:VGNC Symbol;Acc:VGNC:88670]

Location

Chromosome 16: 69,332,585-69,655,380 reverse strand.

Sscrofa11.1:CM000827.5

About this gene

This gene has 3 transcripts (splice variants), 393 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
GRIA1-203	ENSSSCT00000045290.2	6047	906aa	ENSSSCP00000034311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZS63 A0A4X1TV87	<p>APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT1,
GRIA1-202	ENSSSCT00000042645.2	5367	906aa	ENSSSCP00000049561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZJ0 A0A4X1TQ39	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,
GRIA1-201	ENSSSCT00000032251.3	5127	826aa	ENSSSCP00000020699.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TVA2 I3L9I7	-

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Summary

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Gene-based displays