Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Ensembl protein families
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  - Gene tree
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Ontologies
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ID History
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Gene: MMP8 ENSSSCG00000029675

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Description

matrix metallopeptidase 8 [Source:VGNC Symbol;Acc:VGNC:90280]

Location

Chromosome 9: 33,384,028-33,396,947 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 2 transcripts (splice variants), 114 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
MMP8-201	ENSSSCT00000037454.2	2999	436aa	ENSSSCP00000045002.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ALU2	<p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2,
MMP8-202	ENSSSCT00000016347.4	2840	468aa	ENSSSCP00000015908.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SV69	<p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5,

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Summary

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Gene-based displays